Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs77890601 chr4:187811101 T/C 1.97E-6 484 31.18 28.57 26.8 KM Plot
PRAD rs77893605 chr7:6777913 G/A 3.63E-5 490 31 30.2 35.28 KM Plot
PRAD rs77909370 chr1:202700389 T/G 1.04E-5 491 30.93 29.5 27.92 KM Plot
PRAD rs77915640 chr2:107436251 T/C 1.49E-5 489 30.93 30.7 32.63 KM Plot
PRAD rs77915916 chr6:43287722 A/T 5.07E-10 485 31.27 28.57 44.3 KM Plot
PRAD rs7792579 chr7:6765593 C/T 5.25E-5 485 30.87 28.68 46.5 KM Plot
PRAD rs77948929 chr12:52810779 G/A 6.8E-6 479 28.87 36.48 22.2 KM Plot
PRAD rs77950518 chr11:129944533 C/T 1.17E-5 492 30.87 33.13 22.67 KM Plot
PRAD rs7797208 chr7:135137729 C/T 2.02E-9 492 30.77 32.4 3.03 KM Plot
PRAD rs77977226 chr5:154229596 T/A 0 493 29.63 38.33 4.87 KM Plot
PRAD rs78050911 chr11:24225037 C/A 5.74E-9 493 30.8 38.65 22.92 KM Plot
PRAD rs78068354 chr15:75261037 A/T 0.000177 473 31.65 24.88 40.73 KM Plot
PRAD rs78075679 chr5:171530844 C/T 3.52E-7 491 30.87 32 13.17 KM Plot
PRAD rs78077015 chr2:107454923 C/G 0.000126 492 30.75 31.2 32.63 KM Plot
PRAD rs78090229 chr4:187812571 C/T 2.06E-6 483 31.13 28.57 26.8 KM Plot